Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs73476689 chr13:26631570 A/T 3.69E-6 116 42.73 40.67 13.75 KM Plot
THYM rs7354509 chr20:29524968 A/G 8.34E-6 118 38.33 50.1 10.78 KM Plot
THYM rs73551577 chr16:24845143 G/A 5.33E-6 117 49.4 29.23 31.37 KM Plot
THYM rs7355326 chr2:30801698 T/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs7355456 chr2:30802140 G/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs73572263 chr10:12644970 T/C 0.000165 116 42.73 33.78 28.43 KM Plot
THYM rs73617867 chr8:39926132 A/G 8.75E-5 119 40.67 42.73 28.43 KM Plot
THYM rs73617895 chr8:39936024 T/C 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs73617897 chr8:39936293 C/T 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs73624509 chr6:151426927 A/C 0 118 38.13 54.08 4.13 KM Plot
THYM rs73687726 chr7:29688773 T/C 5.22E-13 118 38.33 46.07 6 KM Plot
THYM rs73811573 chr3:9850430 G/A 1.22E-6 118 36.03 53.63 25.83 KM Plot
THYM rs73818907 chr4:12555197 C/T 9.42E-7 119 38.33 57.27 12.78 KM Plot
THYM rs73818908 chr4:12556405 T/C 9.42E-7 119 38.33 57.27 12.78 KM Plot
THYM rs73818931 chr4:12575399 A/G 1.01E-6 118 38.23 57.27 12.78 KM Plot